With a rather interesting easter egg found in Pokemon Omega Ruby and Alpha Sapphire, a Japanese gamer with a copy of the game, discovered a certificate for his original Pokemon of the GBA release would impact the 3DS version.
By transferring the Kyogre from the original Game Boy Advance version to the 3DS, he was presented with the certificate seen above. Which, when translated, states:
Dear player Tetra,
We hereby praise you with this certificate, for your unbreakable friendship and tight-knit bond with Kyogre.
From all members of the Game Freak staff.
Very considerate by the quirky development team at Game Freak.